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Transdisciplinary Medicine and Diagnostic Horizons

Causal Shortcut Reduction for Stable Multi-Center Histopathology Image Diagnosis

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Abstract

Histopathology image diagnosis is vulnerable to shortcut learning because neural networks may capture staining protocols, scanner artifacts, tissue preparation differences, or hospital-specific color distributions rather than disease-related cellular morphology. This study examines causal shortcut reduction for robust tumor classification across heterogeneous pathology centers. We propose a Causal Morphology Constraint Network (CMCN), which identifies shortcut-sensitive features through inter-center risk variation, stain perturbation response, and patch-level attribution consistency. The model then suppresses shortcut dependence using morphology-preserving counterfactual augmentation and an invariant risk penalty across acquisition environments. Experiments were conducted on 86,420 whole-slide image patches collected from 12,760 patients across five medical centers, covering benign tissue, low-grade lesions, and malignant tumors. External validation used two unseen hospitals with different staining machines and scanning resolutions. Compared with a standard DenseNet-121 model, CMCN improved external AUC from 0.781 to 0.846 and reduced the performance gap between internal and external testing from 12.8% to 5.3%. Under synthetic stain shift, classification accuracy decreased by only 3.9%, compared with 14.6% for the baseline model. These results suggest that causal shortcut reduction can improve diagnostic stability in pathology image analysis.

Keywords
Shortcut learningcausal representationhistopathology diagnosisdomain shifttumor classificationinvariant learning
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Publication details
Journal
Transdisciplinary Medicine and Diagnostic Horizons
Volume
1 (2026)
Issue
1 · Forthcoming issue
Article number
tmdh20260003
License
CC BY 4.0